WebStatistical mechanics of coil-hairpin transition in a single stranded DNA oligomer arXiv:cond-mat/0701368v1 [cond-mat.stat-mech] 16 Jan 2007 Sanjay Kumar, Debaprasad Giri† and Yashwant Singh Department of Physics, Banaras Hindu University, Varanasi 221 005, India, † Physics Section, MMV, Banaras Hindu University, Varanasi 221 005, India. WebSiggia, ED & Marko, JF 1996, Statistical Mechanics of Supercoiled DNA: The IMA Volumes in Mathematics and Its Application. in JP Mesirov, K Schulten & DW Sumners (eds), Mathematical Approaches to Biomolecular Structure and Dynamics: The IMA Volumes in Mathematics and Its Application. Springer, New York, pp. 115-6.
DNA supercoiling and its role in DNA decatenation and unknotting
WebSep 1, 1995 · Statistical mechanics of supercoiled DNA J. F. Marko and E. D. Siggia Phys. Rev. E 52, 2912 – Published 1 September 1995 More PDF Export Citation Abstract The two strands of a closed circular DNA molecule possess as a topological invariant their linking … WebDec 1, 1994 · At high salt, the supercoiled chain is quite compact but fairly rigid, whereas at low salt the DNA is loosely coiled but more dynamic. Especially notable at low salt are the large-scale opening and closing of the chain as a whole and the rapid "slithering"of individual residues past one another. black braids with grey
How, Why and When Tsallis Statistical Mechanics Provides …
WebJul 22, 1994 · Supercoil reorganization by means of slithering (reptation) of the DNA along the supercoil is argued to be a slow process. Extension of supercoiled DNA by an applied … WebMar 10, 2024 · Z-Hunt predicts the propensity of Z-DNA formation using statistical mechanics to calculate the potential of each fixed DNA region to form a left-handed helix based on empirically ... Baranello L, Levens D, Gupta A, Kouzine F (2012) The importance of being supercoiled: how DNA mechanics regulate dynamic processes. Biochim Biophys … WebIn addition to equilibrium supercoil structure, we discuss supercoil bending and branching and show how at large scales supercoiled DNA becomes a branched polymer. The … galileo master certificate worth it