Webb1 juli 2024 · Motivation Recent advances in single-cell sequencing (SCS) offer an unprecedented insight into tumor emergence and evolution. Principled approaches to … WebbA Fast Branch and Bound Algorithm for the Perfect Tumor Phylogeny Reconstruction Problem - PhISCS-BnB/main.py at master · algo-cancer/PhISCS-BnB
PhISCS-BnB: a fast branch and bound algorithm for the perfect …
WebbPhISCS-BnB: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problem Erfan Sadeqi Azer, Farid Rashidi Mehrabadi, Salem Malikić, Xuan Cindy Li, Osnat Bartok , Kevin Litchfield, Ronen Levy, Yardena Samuels , Alejandro A. Schäffer, E. Michael Gertz, Chi Ping Day, Eva Pérez-Guijarro, Kerrie Marie, Maxwell P. Lee, … WebbPhISCS-BnB not only o[ff]ers an optimality guarantee, but is also 10 to 100 times faster than the best available methods on simulated tumor SCS data. We also applied PhISCS-BnB on a large melanoma data set derived from the sub-lineages of a cell line involving 24 clones with 3574 mutations, which returned the optimal tumor phylogeny in less than 2 … fishing bay mersing
PhISCS-BnB/main.py at master · algo-cancer/PhISCS-BnB
Webb7 feb. 2024 · Results We introduce PhISCS-BnB, a Branch and Bound algorithm to compute the most likely perfect phylogeny (PP) on an input genotype matrix extracted from a SCS … WebbPhISCS-BnB: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problem (Q97542007) From Wikidata. Jump to navigation Jump to search. scientific article published on 01 July 2024. edit. Language Label … WebbA Fast Branch and Bound Algorithm for the Perfect Tumor Phylogeny Reconstruction Problem - File Finder · algo-cancer/PhISCS-BnB can baby chicks eat worms